2V5Y

CRYSTAL STRUCTURE OF THE RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU ECTODOMAIN

Structural Biology Knowledgebase: 2V5Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 2V5Y

Classification: HYDROLASE

Total Structure Weight: 83294.55

Macromolecule Entities
Molecule Chains Length Organism Details
RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU A 731 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: EXTRACELLULAR REGION, RESIDUES 21-742
Mutation: L48F
Gene Name(s): PTPRM Gene View PTPRL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.242
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 167.34 α = 90.00
b = 69.32 β = 113.52
c = 97.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-11
  • Released Date: 2007-09-11
  • Deposition author(s): Aricescu, A.R., Siebold, C., Choudhuri, K., Chang, V.T., Lu, W., Davis, S.J., Van Der Merwe, P.A., Jones, E.Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor