2Q47

Ensemble refinement of the protein crystal structure of a putative phosphoprotein phosphatase from Arabidopsis thaliana gene At1g05000

Structural Biology Knowledgebase: 2Q47 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.160

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Q47

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 35464.43

Macromolecule Entities
Molecule Chains Length Organism Details
Probable tyrosine-protein phosphatase At1g05000 A, B 151 Arabidopsis thaliana EC#: 3.1.3.48 IUBMB
Fragment: Residues 52-202
Mutation: M61M, M133M, M195M
Gene Name(s): At1g05000 T7A14.14

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.160
  • Space Group: P 21 3

Unit Cell:

Length (Å) Angle (°)
a = 124.48 α = 90.00
b = 124.48 β = 90.00
c = 124.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2011-08-10
    Type: Other | Details: remove REMARK 0
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values