2Q41

Ensemble refinement of the protein crystal structure of spermidine synthase from Arabidopsis thaliana gene At1g23820


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 2Q41

Classification: TRANSFERASE

Total Structure Weight: 147685.70

Macromolecule Entities
Molecule Chains Length Organism Details
Spermidine synthase 1 A, B, C, D 334 Arabidopsis thaliana EC#: 2.5.1.16 IUBMB
Mutation: M26M, M51M, M54M, M109M, M149M, M155M, M242M, M278M
Gene Name(s): SPDSYN1 At1g23820 F5O8.38
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.164
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 88.81 α = 90.00
b = 95.21 β = 104.96
c = 89.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2007-06-19
  • Deposition author(s): Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • 2007-09-25
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2011-08-10
    Type: Other