2PJL

Crystal Structure of Human Estrogen-Related Receptor alpha in Complex with a Synthetic Inverse Agonist reveals its Novel Molecular Mechanism


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 2PJL

Classification: TRANSCRIPTION

Total Structure Weight: 54699.16

Macromolecule Entities
Molecule Chains Length Organism Details
Steroid hormone receptor ERR1 A, B 247 Homo sapiens Fragment: ligand binding domain
Mutation: C325S
Gene Name(s): ESRRA Gene View ERR1 ESRL1 NR3B1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
047
Query on 047

A, B 1-CYCLOHEXYL-N-{[1-(4-METHYLPHENYL)-1H-INDOL- 3-YL]METHYL}METHANAMINE
C23 H28 N2
MMIJMYOYKAKQPN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
047 IC50: 190 nM (99) BindingDB

IC50: 190 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.219
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 96.46 α = 90.00
b = 96.46 β = 90.00
c = 134.59 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-16
  • Released Date: 2007-06-12
  • Deposition author(s): Kallen, J.

Revision History

  • Version 1_0: 2007-06-12

    Type: Initial release

  • Version 1_1: 2007-12-17

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description