2OJU

X-ray structure of complex of human cyclophilin J with cyclosporin A

Structural Biology Knowledgebase: 2OJU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OJU

Classification: ISOMERASE / IMMUNOSUPPRESSANT

Total Structure Weight: 39941.88

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 A, B 167 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIL3 Gene View
CYCLOSPORIN A C, D 11 Tolypocladium inflatum

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000142 C, D Cyclosporin A Cyclic peptide /
Immunosuppressant
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.193
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.39 α = 90.00
b = 64.39 β = 90.00
c = 200.94 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-14
  • Released Date: 2008-01-22
  • Deposition author(s): Xia, Z., Huang, L.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4