2O72

Crystal Structure Analysis of human E-cadherin (1-213)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 2O72

Classification: CELL ADHESION METAL BINDING PROTEIN

Total Structure Weight: 23335.05

Macromolecule Entities
Molecule Chains Length Organism Details
Epithelial-cadherin A 213 Homo sapiens Fragment: N-Terminal domains 1 and 2, residues 155-317
Mutation: C9S
Gene Name(s): CDH1 Gene View CDHE UVO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.191
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 137.34 α = 90.00
b = 41.08 β = 111.15
c = 59.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-09
  • Released Date: 2007-10-09
  • Deposition author(s): Parisini, E., Wang, J.-H.

Revision History

  • Version 1_0: 2007-10-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-18

    Type: Refinement description