HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b DOI:10.2210/pdb2ny1/pdb

2NY1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 106807.34 Molecule: ENVELOPE GLYCOPROTEIN GP120 Polymer: 1 Type: protein Length: 317 Chains: A Fragment: CORE Mutation: I109C, T257S, S334A, S375W, Q428C Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | Q993A8     Molecule: T-cell surface glycoprotein CD4 Polymer: 2 Type: protein Length: 184 Chains: B Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT Organism Homo sapiens Gene Name CD4 UniProtKB:   Protein Feature View | Search PDB | P01730     Molecule: ANTIBODY 17B, LIGHT CHAIN Polymer: 3 Type: protein Length: 214 Chains: C Fragment: ANTIGEN-BINDING FRAGMENT, FAB Organism Homo sapiens Gene Name IGK@ UniProtKB:   Protein Feature View | Search PDB | Q6P5S8     Molecule: ANTIBODY 17B, HEAVY CHAIN Polymer: 4 Type: protein Length: 229 Chains: D Fragment: ANTIGEN-BINDING FRAGMENT, FAB Organism Homo sapiens Gene Name DKFZp686I15212 UniProtKB:   Protein Feature View | Search PDB | Q6N030         Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 4 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens       Related PDB Entries Hide Identifier Details 1GC1  The same ternary complex at 2.5 A  1RZJ  The same ternary complex at 2.2 A  1RZK  The same ternary complex from a primary isolate  2NXY    2NXZ    2NY0    2NY2    2NY3    2NY4    2NY5    2NY6    2NY7        Ligand Chemical Component Hide Identifier Formula Name Interactions NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SUC Search  Download  C12 H22 O11 SUCROSE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 7 Domains - data from SCOP   CATH Classification v3.4.0: 7 Domains - data from CATH   Pfam Classification: 22 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Zhou, T.,  Xu, L.,  Dey, B.,  Hessell, A.J.,  Van Ryk, D.,  Xiang, S.H.,  Yang, X,  Zhang, M.Y.,  Zwick, M.B.,  Arthos, J.,  Burton, D.R.,  Dimitrov, D.S.,  Sodroski, J.,  Wyatt, R.,  Nabel, G.J.,  Kwong, P.D. Deposition:   2006-11-20 Release:   2007-02-06 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.99 R-Value: 0.211 (obs.) R-Free: 0.250 Space Group: P 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 71.11 α = 90.00  b = 88.16 β = 90.00  c = 197.67 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies T-Cell Receptor Hemagglutinin