2MOE

Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA

Structural Biology Knowledgebase: 2MOE SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2MOE

Classification: Hydrolase / DNA

Total Structure Weight: 14207.42


Macromolecule Entities
Molecule Chains Length Organism Details
Methyl-CpG-binding domain protein 4 A 71 Homo sapiens EC#: 3.2.2 IUBMB
Fragment: unp residues 80-148
Gene Name(s): MBD4 Gene View MED1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3') B 10 synthetic MBD4mbd
DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3') C 10 synthetic DNArev

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
B, C DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-24
  • Released Date: 2014-09-10
  • Deposition author(s): Williams, D.C., Walavalkar, N.M.

Revision History

  • 2014-11-19
    Type: Citation | Details: Citation update