2M10

trans form of a photoswitchable PDZ domain crosslinked with an azobenzene derivative

  • Classification: HYDROLASE
  • Deposited: 2012-11-09 Released: 2013-07-03
  • Deposition author(s): Walser, R.
  • Organism: Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): 2

Structural Biology Knowledgebase: 2M10 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2M10

Classification: HYDROLASE

Total Structure Weight: 10592.83

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase non-receptor type 13 A 97 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: PDZ 2 domain residues 1361-1456
Mutation: S22C, E77C
Gene Name(s): PTPN13 Gene View PNP1 PTP1E PTPL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
33B
Query on 33B

A 3,3'-(E)-diazene-1,2-diylbis{6-[(chloroacetyl)amino]benzenesulfonic acid}
C16 H14 Cl2 N4 O8 S2
XGDZZBFDOAZUPI-QURGRASLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-09
  • Released Date: 2013-07-03
  • Deposition author(s): Walser, R.

Revision History

  • 2013-08-07
    Type: Citation | Details: Citation update
  • 2013-07-24
    Type: Citation | Details: Citation update
  • 2013-07-17
    Type: Citation | Details: Citation update
  • 2013-07-03
    Type: Citation | Details: Citation update