2LZG

NMR Structure of Mdm2 (6-125) with Pip-1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 5
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2LZG

Classification: PROTEIN BINDING

Total Structure Weight: 14591.52

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase Mdm2 A 125 Homo sapiens EC#: 6.3.2 IUBMB
Gene Name(s): MDM2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
13Q
Query on 13Q

A [(3R,5R,6S)-5-(3-chlorophenyl)-6-(4-chlorophenyl)- 1-(cyclopropylmethyl)-2-oxopiperidin-3-yl]acetic acid
C23 H23 Cl2 N O3
OMAPWASVHLHIRY-NQSCKRDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
13Q IC50: 34 - 18100 nM (100) BindingDB

N/A in BindingMoad
Kd: 16.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 5
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-02
  • Released Date: 2012-11-07
  • Deposition author(s): Michelsen, K.B., Jordan, J.B., Lewis, J., Long, A.M., Yang, E., Rew, Y., Zhou, J., Yakowec, P., Schnier, P.D., Huang, X., Poppe, L.

Revision History

No revisions since initial release