2LBI

N2-dG:N2-dG interstrand cross-link induced by trans-4-hydroxynonenal


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: Back Calculated Data Agree with Experimental Noesy Spectrum

Literature

Macromolecules
Sequence Display for 2LBI

Classification: DNA

Total Structure Weight: 7487.04

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3') A 12 synthetic
DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3') B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HND
Query on HND

B (4S)-nonane-1,4-diol
C9 H20 O2
BBKPDHOKNRMWQN-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: back calculated data agree with experimental NOESY spectrum

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-31
  • Released Date: 2012-04-04
  • Deposition author(s): Huang, H., Kozekov, I.D., Wang, H., Kozekova, A., Rizzo, C.J., Stone, M.P.

Revision History

No revisions since initial release