2L94

Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication

Structural Biology Knowledgebase: 2L94 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2L94

Classification: RNA / INHIBITOR

Total Structure Weight: 14856.33

Macromolecule Entities
Molecule Chains Length Organism Details
RNA_(45-MER) A 45 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L94
Query on L94

A N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}- N,N-dimethylpropane-1,3-diaminium
C18 H36 N6
QAWYYAYHHZQCLB-UHFFFAOYSA-R
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
L94 N/A in BindingDB
N/A in BindingMoad
Kd: 360000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-01-29
  • Released Date: 2011-06-15
  • Deposition author(s): Marcheschi, R.J., Tonelli, M., Kumar, A., Butcher, S.E.

Revision History

  • 2011-08-31
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4