2KQE

Second PBZ domain of human APLF protein in complex with ribofuranosyladenosine

Structural Biology Knowledgebase: 2KQE SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2KQE

Classification: LYASE

Total Structure Weight: 10535.89

Macromolecule Entities
Molecule Chains Length Organism Details
Aprataxin and PNK-like factor A 89 Homo sapiens EC#: 4.2.99.18 IUBMB
Fragment: sequence database residues 363-451, PBZ-type 2 domain
Gene Name(s): APLF Gene View C2orf13 PALF XIP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADN
Query on ADN

A ADENOSINE
C10 H13 N5 O4
OIRDTQYFTABQOQ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RIB
Query on RIB

A RIBOSE
C5 H10 O5
HMFHBZSHGGEWLO-AIHAYLRMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 10
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-04
  • Released Date: 2010-01-19
  • Deposition author(s): Neuhaus, D., Eustermann, S., Brockmann, C., Yang, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4