2KEQ

Solution structure of DnaE intein from Nostoc punctiforme


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Solution structure of DnaE intein from Nostoc punctiforme: structural basis for the design of a new split intein suitable for site-specific chemical modification.

Oeemig, J.S.Aranko, A.S.Djupsjobacka, J.Heinamaki, K.Iwai, H.

(2009) FEBS Lett 583: 1451-1456

  • DOI: https://doi.org/10.1016/j.febslet.2009.03.058
  • Primary Citation of Related Structures:  
    2KEQ

  • PubMed Abstract: 

    Naturally split DnaE intein from Nostoc punctiforme (Npu) has robust protein trans-splicing activity and high tolerance of sequence variations at the splicing junctions. We determined the solution structure of a single chain variant of NpuDnaE intein by NMR spectroscopy. Based on the NMR structure and the backbone dynamics of the single chain NpuDnaE intein, we designed a functional split variant of the NpuDnaE intein having a short C-terminal half (C-intein) composed of six residues. In vivo and in vitro protein ligation of model proteins by the newly designed split intein were demonstrated.


  • Organizational Affiliation

    Research Program in Structural Biology and Biophysics, Institute of Biotechnology, University of Helsinki, P.O. Box 65, Helsinki FIN-00014, Finland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase III alpha subunit, Nucleic acid binding OB-fold tRNA/helicase-type139Nostoc punctiforme PCC 73102Mutation(s): 1 
Gene Names: DnaENpun_F4872
UniProt
Find proteins for B2J066 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102))
Explore B2J066 
Go to UniProtKB:  B2J066
Find proteins for B2J821 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102))
Explore B2J821 
Go to UniProtKB:  B2J821
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsB2J066B2J821
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2021-11-10
    Changes: Data collection, Database references, Derived calculations