2JNP

Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of N-isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 25
  • Selection Criteria: Target Function

Literature

Macromolecules
Sequence Display for 2JNP

Classification: HYDROLASE

Total Structure Weight: 18570.38

Macromolecule Entities
Molecule Chains Length Organism Details
Matrix metalloproteinase-3 A 161 Homo sapiens EC#: 3.4.24.17 IUBMB
Fragment: residues 88-248
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGH
Query on NGH

A N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
C13 H20 N2 O5 S
JIRXORZYIXSWOB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NGH IC50: 6500 nM (100) BindingDB
Ki: 132 - 133 nM (100) BindingDB

N/A in BindingMoad
Ki: 130 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 25
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-30
  • Released Date: 2007-12-11
  • Deposition author(s): Alcaraz, L.A., Banci, L., Bertini, I., Cantini, F., Donaire, A., Gonnelli, L.

Revision History

  • Version 1_0: 2007-12-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance