2J2M

CRYSTAL STRUCTURE ANALYSIS OF CATALASE FROM EXIGUOBACTERIUM OXIDOTOLERANS

Structural Biology Knowledgebase: 2J2M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2J2M

Classification: OXIDOREDUCTASE

Total Structure Weight: 228831.99

Macromolecule Entities
Molecule Chains Length Organism Details
CATALASE A, B, C, D 491 Exiguobacterium oxidotolerans EC#: 1.11.1.6 IUBMB
Gene Name(s): ektA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.199
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.27 α = 90.00
b = 131.93 β = 107.61
c = 110.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-17
  • Released Date: 2007-01-16
  • Deposition author(s): Hara, I., Ichise, N., Kojima, K., Kondo, H., Ohgiya, S., Matsuyama, H., Yumoto, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4