2H02

Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors

Structural Biology Knowledgebase: 2H02 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2H02

Classification: HYDROLASE

Total Structure Weight: 73391.67

Macromolecule Entities
Molecule Chains Length Organism Details
Protein tyrosine phosphatase, receptor type, B, A, B 313 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: catalytic domain, residues 1662-1973
Gene Name(s): PTPRB Gene View PTPB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2UN
Query on 2UN

A, B {4-[2-BENZYL-3-METHOXY-2-(METHOXYCARBONYL)- 3-OXOPROPYL]PHENYL}SULFAMIC ACID
C19 H21 N O7 S
SUACYXRSGYYBGT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2UN IC50: 320 nM (100) BindingDB
Ki: 200 nM (100) BindingDB

IC50: 320 nM  BindingMOAD
IC50: 320 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.189
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.14 α = 90.00
b = 71.72 β = 93.41
c = 70.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-13
  • Released Date: 2006-06-13
  • Deposition author(s): Evdokimov, A.G., Pokross, M.E., Walter, R.L., Mekel, M., Gray, J.L., Peters, K.G., Maier, M.B., Amarasinghe, K.D., Clark, C.M., Nichols, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor