2GUM

Crystal structure of the extracellular domain of glycoprotein B from Herpes Simplex Virus type I

Structural Biology Knowledgebase: 2GUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.248

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GUM

Classification: VIRAL PROTEIN

Total Structure Weight: 215098.35

Macromolecule Entities
Molecule Chains Length Organism Details
Glycoprotein B A, B, C 628 Human herpesvirus 1 Fragment: residues 103-730
Gene Name(s): gB UL27

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, B, C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 84.96 α = 67.04
b = 100.04 β = 77.99
c = 100.13 γ = 70.31

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-01
  • Released Date: 2006-07-25
  • Deposition author(s): Heldwein, E.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name