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Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes
2FB9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 35107.60
    Molecule: D-alanine:D-alanine ligase
    Polymer: 1 Type: protein Length: 322
    Chains: A
    EC#: 6.3.2.4   
    Organism Thermus caldophilus
    Gene Name ddl
    UniProtKB:   Protein Feature View | Search PDB | Q3T920  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus caldophilus   Taxonomy   Expression System: Escherichia coli  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA,PQS (software)
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  •   Deposition Summary Hide
    Authors:   Lee, J.H.,  Na, Y.,  Eom, S.H.

    Deposition:   2005-12-08
    Release:   2006-08-29
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Biological assembly
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.90
    R-Value: 0.232 (obs.)
    R-Free: 0.268
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 115.22 α = 90.00 
    b = 132.74 β = 90.00 
    c = 59.32 γ = 90.00