2FB9

Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes

Structural Biology Knowledgebase: 2FB9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.228

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FB9

Classification: LIGASE

Total Structure Weight: 35107.60

Macromolecule Entities
Molecule Chains Length Organism Details
D-alanine:D-alanine ligase A 322 Thermus caldophilus EC#: 6.3.2.4 IUBMB
Gene Name(s): ddl


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.228
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 115.22 α = 90.00
b = 132.74 β = 90.00
c = 59.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-08
  • Released Date: 2006-08-29
  • Deposition author(s): Lee, J.H., Na, Y., Eom, S.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4