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Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2
DOI:10.2210/pdb2f5q/pdb   NDB ID: PD0752
2F5Q
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 40593.62
    Molecule: 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'
    Polymer: 1 Type: dna Length: 16
    Chains: B
    Molecule: 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'
    Polymer: 2 Type: dna Length: 16
    Chains: C
    Molecule: formamidopyrimidine-DNA glycosidase
    Polymer: 3 Type: protein Length: 274
    Chains: A
    EC#: 3.2.2.23   
    Mutation: E3Q, Q166C
    Organism Geobacillus stearothermophilus
    Gene Names mutM fpg
    UniProtKB:   Protein Feature View | Search PDB | P84131  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1L1T   
    1R2Y   
    2F5N   
    2F5O   
    2F5P   
    2F5S   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    8OG
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    8OG C10 H14 N5 O8 P DG dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0752
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Banerjee, A.,  Santos, W.L.,  Verdine, G.L.

    Deposition:   2005-11-26
    Release:   2006-03-07
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.35
    R-Value: 0.213 (obs.)
    R-Free: 0.249
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 44.41 α = 90.00 
    b = 92.00 β = 90.00 
    c = 103.05 γ = 90.00