2F13

Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor

Structural Biology Knowledgebase: 2F13 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F13

Classification: hydrolase

Total Structure Weight: 42806.27

Macromolecule Entities
Molecule Chains Length Organism Details
Sialidase 2 A 382 Homo sapiens EC#: 3.2.1.18 IUBMB
Gene Name(s): NEU2 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DYM
Query on DYM

A 6-(2,3-DIHYDROXYPROPOXY)-5-ACETAMIDO-5,6- DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC ACID
2,3-DIHYDROXYPROPYL ETHER MIMETIC (Synonym)
C11 H17 N O8
HEEZEJCEFZJVGN-YRCORFKGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.50 α = 90.00
b = 88.06 β = 90.00
c = 92.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-14
  • Released Date: 2006-11-21
  • Deposition author(s): Chavas, L.M.G., Kato, R., Mann, M.C., Thomson, R.J., Dyason, J.C., von Itzstein, M., Fusi, P., Tringali, C., Venerando, B., Tettamanti, G., Monti, E., Wakatsuki, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4