2EFD

Ara7/AtVps9a

Structural Biology Knowledgebase: 2EFD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.306

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2EFD

Classification: TRANSPORT PROTEIN

Total Structure Weight: 100112.20

Macromolecule Entities
Molecule Chains Length Organism Details
Similarity to vacuolar protein sorting-associated protein VPS9 A, C 267 Arabidopsis thaliana Fragment: Vps9 domain
Gene Name(s): VPS9A VPS9 At3g19770 MMB12.26
Small GTP-binding protein-like B, D 181 Arabidopsis thaliana Fragment: GTPase domain
Gene Name(s): RABF2B ARA-7 RAB5B Gene View At4g19640 F24J7.190


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.306
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 189.54 α = 90.00
b = 189.54 β = 90.00
c = 75.17 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-22
  • Released Date: 2008-02-26
  • Deposition author(s): Uejima, T., Ihara, K., Wakatsuki, S.

Revision History

  • 2011-12-21
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4