2DSX

Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution

Structural Biology Knowledgebase: 2DSX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.68 Å
  • R-Value Free: 0.111
  • R-Value Work: 0.099

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2DSX

Classification: ELECTRON TRANSPORT

Total Structure Weight: 5738.19

Macromolecule Entities
Molecule Chains Length Organism Details
Rubredoxin A 52 Desulfovibrio gigas Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.68 Å
  • R-Value Free: 0.111
  • R-Value Work: 0.099
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 19.47 α = 90.00
b = 41.32 β = 108.20
c = 24.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-07
  • Released Date: 2006-10-10
  • Deposition author(s): Chen, C.-J., Lin, Y.-H., Huang, Y.-C., Liu, M.-Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4