2D57

Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.20 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.283 
  • R-Value Observed: 0.283 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Implications of the Aquaporin-4 Structure on Array Formation and Cell Adhesion

Hiroaki, Y.Tani, K.Kamegawa, A.Gyobu, N.Nishikawa, K.Suzuki, H.Walz, T.Sasaki, S.Mitsuoka, K.Kimura, K.Mizoguchi, A.Fujiyoshi, Y.

(2005) J Mol Biol 355: 628-639

  • DOI: https://doi.org/10.1016/j.jmb.2005.10.081
  • Primary Citation of Related Structures:  
    2D57

  • PubMed Abstract: 

    Aquaporin-4 (AQP4) is the predominant water channel in the mammalian brain and an important drug target for treatment of cerebral edema, bipolar disorder and mesial temporal lobe epilepsy. We determined the AQP4 structure by electron crystallography of double-layered, two-dimensional (2D) crystals. The structure allows us to discuss how the expression ratio between the long and short AQP4 splicing variant can determine the size of in vivo orthogonal arrays. Furthermore, AQP4 contains a short 3(10) helix in an extracellular loop, which mediates weak but specific interactions between AQP4 molecules in adjoining membranes. This finding suggests a previously unexpected role for AQP4 in cell adhesion. This notion was corroborated by expression of AQP4 in L-cells, which resulted in clustering of the cells. Our AQP4 structure thus enables us to propose models for the size regulation of orthogonal arrays and channel-mediated cell adhesion.


  • Organizational Affiliation

    Department of Biophysics, Faculty of Science, Kyoto University, Kitashirakawa, Kyoto 606-8502, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aquaporin-4301Rattus norvegicusMutation(s): 0 
Gene Names: Aqp4
Membrane Entity: Yes 
UniProt
Find proteins for P47863 (Rattus norvegicus)
Explore P47863 
Go to UniProtKB:  P47863
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47863
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.20 Å
  • R-Value Free: 0.338 
  • R-Value Work: 0.283 
  • R-Value Observed: 0.283 
  • Space Group: P 4 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69α = 90
b = 69β = 90
c = 160γ = 90
Software Package:
Software NamePurpose
CNSrefinement
MRCdata reduction
MRCdata scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-01-31
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2018-07-18
    Changes: Author supporting evidence, Data collection, Database references
  • Version 1.4: 2023-11-08
    Changes: Data collection, Database references, Experimental preparation, Refinement description