2CL5

CATECHOL-O-METHYLTRANSFERASE IN COMPLEX WITH AN INHIBITOR

Structural Biology Knowledgebase: 2CL5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.149

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CL5

Classification: TRANSFERASE

Total Structure Weight: 51374.52

Macromolecule Entities
Molecule Chains Length Organism Details
CATECHOL O-METHYLTRANSFERASE A, B 221 Rattus norvegicus EC#: 2.1.1.6 IUBMB
Gene Name(s): Comt

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A, B S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BIE
Query on BIE

A, B (3,4-DIHYDROXY-2-NITROPHENYL)(PHENYL)METHANONE
BIA 3-335 (Synonym)
C13 H9 N O5
ICLKAUQIPVFHOI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BU3
Query on BU3

A, B (R,R)-2,3-BUTANEDIOL
C4 H10 O2
OWBTYPJTUOEWEK-QWWZWVQMSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.149
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.77 α = 90.00
b = 79.63 β = 91.14
c = 61.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-26
  • Released Date: 2006-06-28
  • Deposition author(s): Palma, P.N., Rodrigues, M.L., Archer, M., Bonifacio, M.J., Loureiro, A.I., Learmonth, D.A., Carrondo, M.A., Soares-Da-Silva, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4