2CJW

CRYSTAL STRUCTURE OF THE SMALL GTPASE GEM (GEMDNDCAM) IN COMPLEX TO MG.GDP

Structural Biology Knowledgebase: 2CJW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CJW

Classification: G-PROTEIN

Total Structure Weight: 45799.14

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-BINDING PROTEIN GEM A 192 Homo sapiens Fragment: G DOMAIN, RESIDUES 74-261
Gene Name(s): GEM Gene View KIR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GTP-BINDING PROTEIN GEM B 192 Homo sapiens Fragment: G DOMAIN, RESIDUES 74-261
Gene Name(s): GEM Gene View KIR

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GDP N/A in BindingDB
Kd: 2500 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CAS
Query on CAS
A, B L-PEPTIDE LINKING C5 H12 As N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.209
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.62 α = 90.00
b = 116.62 β = 90.00
c = 81.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-09
  • Released Date: 2006-11-09
  • Deposition author(s): Splingard, A., Menetrey, J., Perderiset, M., Cicolari, J., Hamoudi, F., Cabanie, L., El Marjou, A., Wells, A., Houdusse, A., De Gunzburg, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4