GALACTOSE RECOGNITION BY THE CARBOHYDRATE-BINDING MODULE OF A BACTERIAL SIALIDASE.
2BZD

Entry 2BZD supersedes 2BQ9

Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 193609.63
    Molecule: BACTERIAL SIALIDASE
    Polymer: 1 Type: protein Length: 601
    Chains: A, B, C
    EC#: 3.2.1.18   
    Fragment: RESIDUES 47-647
    Mutation: YES
    Organism: Micromonospora viridifaciens
    Gene Name: nedA
    UniProtKB: Protein Feature View | Search PDB | Q02834  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Micromonospora viridifaciens   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1EUR   SIALIDASE 
    1EUS   SIALIDASE COMPLEXED WITH 2-DEOXY-2,3- DEHYDRO-N- ACETYLNEURAMINIC ACID 
    1EUT   SIALIDASE, LARGE 68KD FORM, COMPLEXED WITH GALACTOSE 
    1EUU   SIALIDASE OR NEURAMINIDASE, LARGE 68KD FORM 
    1W8N   CONTRIBUTION OF THE ACTIVE SITE ASPARTIC ACID TO CATALYSIS IN THE BACTERIAL NEURAMINIDASE FROM MICROMONOSPORA VIRIDIFACIENS. 
    1W8O   CONTRIBUTION OF THE ACTIVE SITE ASPARTIC ACID TO CATALYSIS IN THE BACTERIAL NEURAMINIDASE FROM MICROMONOSPORA VIRIDIFACIENS 
    1WCQ   MUTAGENESIS OF THE NUCLEOPHILIC TYROSINE IN A BACTERIAL SIALIDASE TO PHENYLALANINE. 
    2BER   Y370G ACTIVE SITE MUTANT OF THE SIALIDASE FROM MICROMONOSPORA VIRIDIFACIENS IN COMPLEX WITH BETA-NEU5AC (SIALIC ACID). 
    2BQ9   GALACTOSE RECOGNITION BY THE CARBOHYDRATE- BINDING MODULE OF A BACTERIAL SIALIDASE 
     
  •   Ligand Chemical Component Hide
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    GAL
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    GAL
    N/Ain BindingDB
    Kd: 1000000 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Newstead, S.L.,  Taylor, G.

    Deposition:   2005-08-16
    Release:   2005-08-19
    Last Modified (REVDAT):   2011-07-13

    Previous versions:  2BQ9
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
    2011-07-13
    Flag residual B-value
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.197 (obs.)
    R-Free: 0.267
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 141.46 α = 90.00 
    b = 141.46 β = 90.00 
    c = 158.88 γ = 120.00