2AM1

sp protein ligand 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 2AM1

Classification: LIGASE

Total Structure Weight: 51339.12

Macromolecule Entities
Molecule Chains Length Organism Details
UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein A 454 Streptococcus pneumoniae EC#: 6.3.2.10 IUBMB
Mutation: M1M, M117M, M148M, M159M, M203M, M209M, M279M, M332M, M357M, M371M, M400M, M443M
Gene Name(s): murF spr1514
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1LG
Query on 1LG

A 2,4-DICHLORO-N-(3-CYANO-4,5,6,7-TETRAHYDRO- BENZOTHIOPHEN-2YL)-5-(MORPHOLINE-4-SULFONYL)- BENZAMIDE
C20 H19 Cl2 N3 O4 S2
JMCVGASJAJMFPN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1LG IC50: 1000 nM (99 - 100) BindingDB

IC50: 1000 nM  BindingMOAD
IC50: 1000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.238
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 116.27 α = 90.00
b = 116.27 β = 90.00
c = 161.39 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-08
  • Released Date: 2006-01-24
  • Deposition author(s): Longenecker, K.L., Stamper, G.F., Hajduk, P.J., Fry, E.H., Jakob, C.G., Harlan, J.E., Edalji, R., Bartley, D.M., Walter, K.A., Solomon, L.R.

Revision History

  • Version 1_0: 2006-01-24

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description