2Z6F

Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme

Structural Biology Knowledgebase: 2Z6F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Z6F

Classification: HEME BINDING PROTEIN

Total Structure Weight: 15471.12

Macromolecule Entities
Molecule Chains Length Organism Details
Iron-regulated surface determinant protein H A 131 Staphylococcus aureus Fragment: NEAT 3 domain, residue 539-664
Gene Name(s): isdH harA sasI SAV1731

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.193
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.22 α = 90.00
b = 75.69 β = 90.00
c = 39.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-31
  • Released Date: 2008-07-29
  • Deposition author(s): Tanaka, Y., Suenaga, A., Tsumoto, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4