2Z4Z

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-sc01


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 2Z4Z

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 79415.22

Macromolecule Entities
Molecule Chains Length Organism Details
Geranylgeranyl pyrophosphate synthetase A, B 340 Saccharomyces cerevisiae Gene Name(s): BTS1 YPL069C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SC0
Query on SC0

A, B (6E,11E)-HEPTADECA-6,11-DIENE-9,9-DIYLBIS(PHOSPHONIC ACID)
C17 H34 O6 P2
PFKBXXKNHWTTCS-PHEQNACWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SC0 N/A in BindingDB
IC50: 1860 nM  BindingMOAD
IC50: 1860 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.187
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.61 α = 90.00
b = 116.34 β = 90.00
c = 129.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-26
  • Released Date: 2008-07-01
  • Deposition author(s): Chen, C.K.-M., Guo, R.T., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.

Revision History

  • Version 1_0: 2008-07-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance