2Z4X

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-252 (P21)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 2Z4X

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 79352.38

Macromolecule Entities
Molecule Chains Length Organism Details
Geranylgeranyl pyrophosphate synthetase A, B 340 Saccharomyces cerevisiae Gene Name(s): BTS1 YPL069C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
252
Query on 252

A, B (1-HYDROXYNONANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
C9 H22 O7 P2
COHUUYPEYRMWTH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
252 N/A in BindingDB
IC50: 710 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.196
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 82.40 α = 90.00
b = 47.87 β = 110.86
c = 91.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-26
  • Released Date: 2008-07-01
  • Deposition author(s): Guo, R.T., Chen, C.K.-M., Hudock, M., Cao, R., Oldfield, E., Wang, A.H.-J.

Revision History

  • Version 1_0: 2008-07-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance