2YPV

Crystal structure of the Meningococcal vaccine antigen factor H binding protein in complex with a bactericidal antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 2YPV

Classification: IMMUNE SYSTEM

Total Structure Weight: 74636.98

Macromolecule Entities
Molecule Chains Length Organism Details
LIPOPROTEIN A 253 Neisseria meningitidis Gene Name(s): NMB1870
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB 12C1 H 218 Mus musculus
FAB 12C1 L 214 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, H, L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.181
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.80 α = 90.00
b = 81.85 β = 90.00
c = 152.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-01
  • Released Date: 2013-02-20
  • Deposition author(s): Malito, E., Veggi, D., Bottomley, M.J.

Revision History

  • Version 1_0: 2013-02-20

    Type: Initial release

  • Version 1_1: 2013-03-20

    Type: Database references