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HIV-1 Reverse Transcriptase in complex with inhibitor GSK500
2YNH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 117755.38
    Molecule: REVERSE TRANSCRIPTASE/RIBONUCLEASE H
    Polymer: 1 Type: protein Length: 563
    Chains: A
    EC#: 2.7.7.49    2.7.7.7    3.1.26.13   
    Organism HIV-1 M:B_HXB2R
    Gene Name gag-pol
    UniProtKB:   Protein Feature View | Search PDB | P04585  
    Molecule: P51 RT
    Polymer: 2 Type: protein Length: 447
    Chains: B
    EC#: 2.7.7.49    2.7.7.7    3.1.26.13   
    Fragment: RESIDUES 588-1015
    Organism HIV-1 M:B_HXB2R
    Gene Name gag-pol
    UniProtKB:   Protein Feature View | Search PDB | P04585  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Hiv-1 m\:b_hxb2r   Taxonomy   Common Name: Human immunodeficiency virus type 1 (hxb2 isolate) Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Hiv-1 m\:b_hxb2r   Taxonomy   Common Name: Human immunodeficiency virus type 1 (hxb2 isolate) Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1A30  HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR 
    1BV7  COUNTERACTING HIV-1 PROTEASE DRUG RESISTANCE: STRUCTURAL ANALYSIS OF MUTANT PROTEASES COMPLEXED WITH XV638 AND SD146, CYCLIC UREA AMIDES WITH BROAD SPECIFICITIES 
    1BV9  HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS 
    1BVE  HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES 
    1BVG  HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE 
    1BWA  HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS 
    1BWB  HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH SD146 OF DUPONT PHARMACEUTICALS 
    1C0T  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH BM+21.1326 
    1C0U  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH BM+50.0934 
    1C1B  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GCA- 186 
    1C1C  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK- 6123 
    1DMP  STRUCTURE OF HIV-1 PROTEASE COMPLEX 
    1DTQ  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-1 (PETT131A94) 
    1DTT  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-2 (PETT130A94) 
    1E6J  CRYSTAL STRUCTURE OF HIV-1 CAPSID PROTEIN (P24) IN COMPLEX WITH FAB13B5 
    1EP4  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH S-1153 
    1ESK  SOLUTION STRUCTURE OF NCP7 FROM HIV-1 
    1EX4  HIV-1 INTEGRASE CATALYTIC CORE AND C-TERMINAL DOMAIN 
    1EXQ  CRYSTAL STRUCTURE OF THE HIV-1 INTEGRASE CATALYTIC COREDOMAIN 
    1FB7  CRYSTAL STRUCTURE OF AN IN VIVO HIV-1 PROTEASE MUTANT INCOMPLEX WITH SAQUINAVIR: INSIGHTS INTO THE MECHANISMS OFDRUG RESISTANCE 
    1FK9  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH DMP-266(EFAVIRENZ) 
    1FKO  CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV- 1REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ ) 
    1FKP  CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV- 1REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1G6L  1.9A CRYSTAL STRUCTURE OF TETHERED HIV-1 PROTEASE 
    1HIV  HIV-1 PROTEASE (HIV-1 PR) COMPLEX WITH U75875 (NOA- HIS-CHA-PSI[CH(OH)CH(OH)]VAL-ILE-APY) 
    1HVH  NONPEPTIDE CYCLIC CYANOGUANIDINES AS HIV PROTEASE INHIBITORS 
    1HVR  HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HIV-1) PROTEASE COMPLEXED WITH XK263 OF DUPONT MERCK 
    1HWR  MOLECULAR RECOGNITION OF CYCLIC UREA HIV PROTEASE INHIBITORS 
    1HXB  HIV-1 PROTEINASE COMPLEXED WITH RO 31-8959 
    1JKH  CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ) 
    1JLA  CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH TNK-651 
    1JLB  CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1JLC  CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH PETT-2 
    1JLE  CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSETRANSCRIPTASE 
    1JLF  CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1JLG  CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH UC-781 
    1JLQ  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH 739W94 
    1KLM  HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH BHAP U- 90152 
    1LV1  CRYSTAL STRUCTURE ANALYSIS OF THE NON-ACTIVE SITE MUTANT OFTETHERED HIV-1 PROTEASE TO 2.1A RESOLUTION 
    1LW0  CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1LW2  CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH 1051U91 
    1LWC  CRYSTAL STRUCTURE OF M184V MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1LWE  CRYSTAL STRUCTURE OF M41L/T215Y MUTANT HIV-1 REVERSETRANSCRIPTASE (RTMN) IN COMPLEX WITH NEVIRAPINE 
    1LWF  CRYSTAL STRUCTURE OF A MUTANT HIV-1 REVERSE TRANSCRIPTASE(RTMQ+M184V: M41L/D67N/K70R/M184V/T215Y) IN COMPLEX WITHNEVIRAPINE 
    1NCP   
    1O1W  SOLUTION STRUCTURE OF THE RNASE H DOMAIN OF THE HIV -1REVERSE TRANSCRIPTASE IN THE PRESENCE OF MAGNESIUM 
    1ODW  NATIVE HIV-1 PROTEINASE 
    1ODY  HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130 
    1QBR  HIV-1 PROTEASE INHIBITORS WIIH LOW NANOMOLAR POTENCY 
    1QBS  HIV-1 PROTEASE INHIBITORS WIIH LOW NANOMOLAR POTENCY 
    1QBT  HIV-1 PROTEASE INHIBITORS WIIH LOW NANOMOLAR POTENCY 
    1QBU  HIV-1 PROTEASE INHIBITORS WIIH LOW NANOMOLAR POTENCY 
    1REV  HIV-1 REVERSE TRANSCRIPTASE 
    1RT1  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH MKC-442 
    1RT2  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH TNK-651 
    1RT3  AZT DRUG RESISTANT HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH 1051U91 
    1RT4  HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC781 
    1RT5  HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC10 
    1RT6  HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC38 
    1RT7  HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC84 
    1RTD  STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE 
    1RTH   
    1RTI   
    1RTJ   
    1S1T  CRYSTAL STRUCTURE OF L100I MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH UC-781 
    1S1U  CRYSTAL STRUCTURE OF L100I MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1S1V  CRYSTAL STRUCTURE OF L100I MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH TNK-651 
    1S1W  CRYSTAL STRUCTURE OF V106A MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH UC-781 
    1S1X  CRYSTAL STRUCTURE OF V108I MUTANT HIV-1 REVERSETRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE 
    1T05  HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TEMPLATE- PRIMERWITH TENOFOVIR-DIPHOSPHATE BOUND AS THE INCOMINGNUCLEOTIDE SUBSTRATE 
    1TAM  HUMAN IMMUNODEFICIENCY VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE 
    1TKT  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH GW426318 
    1TKX  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH GW490745 
    1TKZ  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH GW429576 
    1TL1  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH GW451211 
    1TL3  CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEXWITH GW450557 
    1VRT   
    1VRU   
    2WHH  HIV-1 PROTEASE TETHERED DIMER Q-PRODUCT COMPLEX ALONG WITH NUCLEOPHILIC WATER MOLECULE 
    2WOM  CRYSTAL STRUCTURE OF UK-453061 BOUND TO HIV-1 REVERSE TRANSCRIPTASE (K103N). 
    2WON  CRYSTAL STRUCTURE OF UK-453061 BOUND TO HIV-1 REVERSE TRANSCRIPTASE (WILD-TYPE). 
    2YNF  HIV-1 REVERSE TRANSCRIPTASE Y188L MUTANT IN COMPLEX WITH INHIBITOR GSK560 
    2YNG  HIV-1 REVERSE TRANSCRIPTASE MUTANT IN COMPLEX WITH INHIBITOR GSK560 
    2YNI  HIV-1 REVERSE TRANSCRIPTASE MUTANT IN COMPLEX WITH INHIBITOR GSK952 
    3PHV  HIV-1 PROTEASE (ISOLATE HXB2) 
    4B3O  STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE 
    4B3P  STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE 
    4B3Q  STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EUR
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    EUR C19 H12 Cl3 F N4 O3
    4-chloranyl-N-[[4-chloranyl-3-(3-chloranyl- 5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]- 2-(hydroxymethyl)-1H-imidazole-5-carboxamide
    EUR:2YNH
    TAR
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    TAR C4 H6 O6
    D(-)-TARTARIC ACID
    TAR:2YNH
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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