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The cryo-EM structure of a 3D DNA-origami object
2YMR
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2YMF   2YMG   2YMH   2YMI   2YMR  
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 786859.04
    Molecule: STAPLE STRAND
    Polymer: 1 Type: dna Length: 41
    Chains: 0
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 2 Type: dna Length: 51
    Chains: 1
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 3 Type: dna Length: 56
    Chains: 2
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 4 Type: dna Length: 48
    Chains: 3
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 5 Type: dna Length: 71
    Chains: 4
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 6 Type: dna Length: 62
    Chains: 5
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 7 Type: dna Length: 48
    Chains: 6
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 8 Type: dna Length: 52
    Chains: 7
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 9 Type: dna Length: 44
    Chains: 8
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 10 Type: dna Length: 54
    Chains: B
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 11 Type: dna Length: 47
    Chains: C
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 12 Type: dna Length: 48
    Chains: D
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 13 Type: dna Length: 40
    Chains: E
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 14 Type: dna Length: 40
    Chains: F
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 15 Type: dna Length: 44
    Chains: G
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 16 Type: dna Length: 48
    Chains: H
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 17 Type: dna Length: 44
    Chains: I
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 18 Type: dna Length: 59
    Chains: J
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 19 Type: dna Length: 48
    Chains: K
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 20 Type: dna Length: 48
    Chains: L
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 21 Type: dna Length: 54
    Chains: M
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 22 Type: dna Length: 41
    Chains: N
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 23 Type: dna Length: 48
    Chains: O
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 24 Type: dna Length: 56
    Chains: P
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 25 Type: dna Length: 38
    Chains: Q
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 26 Type: dna Length: 48
    Chains: R
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 27 Type: dna Length: 48
    Chains: S
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 28 Type: dna Length: 48
    Chains: T
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 29 Type: dna Length: 32
    Chains: U
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 30 Type: dna Length: 53
    Chains: V
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 31 Type: dna Length: 38
    Chains: W
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 32 Type: dna Length: 47
    Chains: X
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 33 Type: dna Length: 43
    Chains: Y
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 34 Type: dna Length: 48
    Chains: Z
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 35 Type: dna Length: 44
    Chains: b
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 36 Type: dna Length: 62
    Chains: c
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 37 Type: dna Length: 42
    Chains: d
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 38 Type: dna Length: 52
    Chains: e
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 39 Type: dna Length: 48
    Chains: f
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 40 Type: dna Length: 46
    Chains: g
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 41 Type: dna Length: 47
    Chains: h
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 42 Type: dna Length: 29
    Chains: k
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 43 Type: dna Length: 48
    Chains: p
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 44 Type: dna Length: 40
    Chains: q
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 45 Type: dna Length: 46
    Chains: r
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 46 Type: dna Length: 49
    Chains: s
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 47 Type: dna Length: 44
    Chains: t
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 48 Type: dna Length: 60
    Chains: u
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 49 Type: dna Length: 46
    Chains: v
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 50 Type: dna Length: 54
    Chains: w
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 51 Type: dna Length: 46
    Chains: x
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 52 Type: dna Length: 66
    Chains: y
    Organism synthetic construct
    Molecule: STAPLE STRAND
    Polymer: 53 Type: dna Length: 48
    Chains: z
    Organism synthetic construct
     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 6
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 7
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 8
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 9
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 10
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 11
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 12
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 13
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 14
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 15
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 16
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 17
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 18
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 19
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 20
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 21
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 22
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 23
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 24
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 25
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 26
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 27
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 28
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 29
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 30
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 31
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 32
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 33
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 34
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 35
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 36
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 37
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 38
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 39
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 40
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 41
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 42
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 43
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 44
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 45
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 46
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 47
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 48
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 49
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 50
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 51
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 52
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 53
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (2YMF, 2YMG, 2YMH, 2YMI AND 2YMR)
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Bai, X.C.,  Martin, T.G.,  Scheres, S.H.W.,  Dietz, H.

    Deposition:   2012-10-10
    Release:   2012-11-28
    Last Modified (REVDAT):   2012-12-12
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Citation
     
  •   Experimental Details Hide
    Method:   ELECTRON MICROSCOPY
    Exp. Data:


    EM Resolution [Å]: 11.5
    Aggregation State: PARTICLE
    Reconstruction Method: SINGLE PARTICLE
    Specimen Type: VITREOUS ICE