2YKR

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Structural Biology Knowledgebase: 2YKR SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 2YKR

Classification: RIBOSOME / HYDROLASE

Total Structure Weight: 800901.38


Macromolecule Entities
Molecule Chains Length Organism Details
30S RIBOSOMAL PROTEIN S2 B 218 Escherichia coli Fragment: RESIDUES 9-226
Gene Name(s): rpsB b0169 JW0164
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S3 C 206 Escherichia coli Fragment: RESIDUES 2-207
Gene Name(s): rpsC b3314 JW3276
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S4 D 205 Escherichia coli Fragment: RESIDUES 2-206
Gene Name(s): rpsD ramA b3296 JW3258
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S5 E 150 Escherichia coli Fragment: RESIDUES 10-159
Gene Name(s): rpsE spc b3303 JW3265
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S6 F 100 Escherichia coli Fragment: RESIDUES 1-100
Gene Name(s): rpsF b4200 JW4158
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S7 G 151 Escherichia coli Fragment: RESIDUES 2-152
Gene Name(s): rpsG b3341 JW3303
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S8 H 129 Escherichia coli Fragment: RESIDUES 2-130
Gene Name(s): rpsH b3306 JW3268
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S9 I 127 Escherichia coli Fragment: RESIDUES 4-130
Gene Name(s): rpsI b3230 JW3199
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S10 J 98 Escherichia coli Fragment: RESIDUES 5-102
Gene Name(s): rpsJ nusE b3321 JW3283
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S11 K 117 Escherichia coli Fragment: RESIDUES 13-129
Gene Name(s): rpsK b3297 JW3259
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S12 L 123 Escherichia coli Fragment: RESIDUES 2-124
Gene Name(s): rpsL strA b3342 JW3304
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S13 M 114 Escherichia coli Fragment: RESIDUES 2-115
Gene Name(s): rpsM b3298 JW3260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S14 N 100 Escherichia coli Fragment: RESIDUES 2-101
Mutation: E39D
Gene Name(s): rpsN b3307 JW3269
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S15 O 88 Escherichia coli Fragment: RESIDUES 2-89
Gene Name(s): rpsO secC b3165 JW3134
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S16 P 82 Escherichia coli Gene Name(s): rpsP b2609 JW2590
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S17 Q 80 Escherichia coli Fragment: RESIDUES 4-83
Gene Name(s): rpsQ neaA b3311 JW3273
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S18 R 55 Escherichia coli Fragment: RESIDUES 20-74
Gene Name(s): rpsR ETEC_4548
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S19 S 79 Escherichia coli Fragment: RESIDUES 3-81
Gene Name(s): rpsS b3316 JW3278
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S20 T 85 Escherichia coli Fragment: RESIDUES 3-87
Gene Name(s): rpsT b0023 JW0022
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S RIBOSOMAL PROTEIN S21 U 51 Escherichia coli Fragment: RESIDUES 4-54
Gene Name(s): rpsU b3065 JW3037
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA W 350 Escherichia coli EC#: 3.6.1 IUBMB
Gene Name(s): rsgA engC yjeQ b4161 JW4122
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
16S RRNA A 1533 Escherichia coli


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-30
  • Released Date: 2011-08-24
  • Deposition author(s): Guo, Q., Yuan, Y., Xu, Y., Feng, B., Liu, L., Chen, K., Lei, J., Gao, N.

Revision History

  • 2013-03-20
    Type: Other | Details: SCALE3, SCALE2, CRYST1, SCALE1, REMARK 900
  • 2013-03-20
    Type: Refinement description | Details: REMARK 3