2Y7J

STRUCTURE OF HUMAN PHOSPHORYLASE KINASE, GAMMA 2

Structural Biology Knowledgebase: 2Y7J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y7J

Classification: TRANSFERASE

Total Structure Weight: 171276.71

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHORYLASE B KINASE GAMMA CATALYTIC CHAIN, TESTIS/LIVER ISOFORM A, B, C, D 365 Homo sapiens EC#: 2.7.11.19 IUBMB
Fragment: RESIDUES 6-293
Gene Name(s): PHKG2 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B49
Query on B49

A, B, C, D N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro- 2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]- 2,4-dimethyl-1H-pyrrole-3-carboxamide
SUNITINIB (Synonym)
C22 H27 F N4 O2
WINHZLLDWRZWRT-ATVHPVEESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
B49 Kd: 5.9 - 5900 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.79 α = 90.00
b = 91.42 β = 90.00
c = 164.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-31
  • Released Date: 2011-02-09
  • Deposition author(s): Muniz, J.R.C., Shrestha, A., Savitsky, P., Wang, J., Rellos, P., Fedorov, O., Burgess-Brown, N., Brenner, B., Berridge, G., Elkins, J.M., Krojer, T., Vollmar, M., Che, K.H., Von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S.

Revision History

  • 2011-10-12
    Type: Refinement description | Details: REMARK 3
  • 2011-10-12
    Type: Source and taxonomy | Details: SOURCE
  • 2011-10-12
    Type: Data collection | Details: REMARK 200
  • 2011-10-12
    Type: Atom nomenclature | Details: HETATM
  • 2011-10-12
    Type: Version format compliance | Details: REMARK 4