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THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME
DOI:10.2210/pdb2y0y/pdb   NDB ID: 2Y0Y
2Y0Y
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2Y0Y   2Y0Z   2Y12   2Y13  
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The complete entry has been assigned PDB ID 4V5Q and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v5q.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v5q.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 912205.04
    Molecule: 16S RRNA
    Polymer: 1 Type: rna Length: 1522
    Chains: A
    Details: CHAIN A (16S RNA) HAS E.COLI NUMBERING, BASED ON A STRUCTURAL ALIGNMENT WITH THE CORRESPONDING E. COLI STRUCTURE IN 2AVY.
    Organism Thermus thermophilus HB8
    Molecule: 30S RIBOSOMAL PROTEIN S2
    Polymer: 2 Type: protein Length: 256
    Chains: B
    Organism Thermus thermophilus HB8
    Gene Names rpsB rps2 TTHA0861
    UniProtKB:   Protein Feature View | Search PDB | P80371  
    Molecule: 30S RIBOSOMAL PROTEIN S3
    Polymer: 3 Type: protein Length: 239
    Chains: C
    Organism Thermus thermophilus HB8
    Gene Names rpsC rps3 TTHA1686
    UniProtKB:   Protein Feature View | Search PDB | P80372  
    Molecule: 30S RIBOSOMAL PROTEIN S4
    Polymer: 4 Type: protein Length: 209
    Chains: D
    Organism Thermus thermophilus HB8
    Gene Names rpsD rps4 TTHA1665
    UniProtKB:   Protein Feature View | Search PDB | P80373  
    Molecule: 30S RIBOSOMAL PROTEIN S5
    Polymer: 5 Type: protein Length: 162
    Chains: E
    Organism Thermus thermophilus HB8
    Gene Names rpsE TTHA1675
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ5  
    Molecule: 30S RIBOSOMAL PROTEIN S6
    Polymer: 6 Type: protein Length: 101
    Chains: F
    Organism Thermus thermophilus HB8
    Gene Names rpsF TTHA0245
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP8  
    Molecule: 30S RIBOSOMAL PROTEIN S7
    Polymer: 7 Type: protein Length: 156
    Chains: G
    Organism Thermus thermophilus HB8
    Gene Names rpsG rps7 TTHA1696
    UniProtKB:   Protein Feature View | Search PDB | P17291  
    Molecule: 30S RIBOSOMAL PROTEIN S8
    Polymer: 8 Type: protein Length: 138
    Chains: H
    Organism Thermus thermophilus HB8
    Gene Names rpsH TTHA1678
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2  
    Molecule: 30S RIBOSOMAL PROTEIN S9
    Polymer: 9 Type: protein Length: 128
    Chains: I
    Organism Thermus thermophilus HB8
    Gene Names rpsI rps9 TTHA1464
    UniProtKB:   Protein Feature View | Search PDB | P80374  
    Molecule: 30S RIBOSOMAL PROTEIN S10
    Polymer: 10 Type: protein Length: 105
    Chains: J
    Organism Thermus thermophilus HB8
    Gene Names rpsJ TTHA1693
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN7  
    Molecule: 30S RIBOSOMAL PROTEIN S11
    Polymer: 11 Type: protein Length: 129
    Chains: K
    Organism Thermus thermophilus HB8
    Gene Names rpsK rps11 TTHA1666
    UniProtKB:   Protein Feature View | Search PDB | P80376  
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 12 Type: protein Length: 132
    Chains: L
    Organism Thermus thermophilus HB8
    Gene Names rpsL TTHA1697
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN3  
    Molecule: 30S RIBOSOMAL PROTEIN S13
    Polymer: 13 Type: protein Length: 126
    Chains: M
    Organism Thermus thermophilus HB8
    Gene Names rpsM rps13 TTHA1667
    UniProtKB:   Protein Feature View | Search PDB | P80377  
    Molecule: 30S RIBOSOMAL PROTEIN S14
    Polymer: 14 Type: protein Length: 61
    Chains: N
    Organism Thermus thermophilus HB8
    Gene Names rpsZ rpsN TTHA1679
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ1  
    Molecule: 30S RIBOSOMAL PROTEIN S15
    Polymer: 15 Type: protein Length: 89
    Chains: O
    Organism Thermus thermophilus HB8
    Gene Names rpsO TTHA1138
    UniProtKB:   Protein Feature View | Search PDB | Q5SJ76  
    Molecule: 30S RIBOSOMAL PROTEIN S16
    Polymer: 16 Type: protein Length: 88
    Chains: P
    Organism Thermus thermophilus HB8
    Gene Names rpsP TTHA1035
    UniProtKB:   Protein Feature View | Search PDB | Q5SJH3  
    Molecule: 30S RIBOSOMAL PROTEIN S17
    Polymer: 17 Type: protein Length: 105
    Chains: Q
    Organism Thermus thermophilus HB8
    Gene Names rpsQ TTHA1683
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP7  
    Molecule: 30S RIBOSOMAL PROTEIN S18
    Polymer: 18 Type: protein Length: 88
    Chains: R
    Organism Thermus thermophilus HB8
    Gene Names rpsR TTHA0243
    UniProtKB:   Protein Feature View | Search PDB | Q5SLQ0  
    Molecule: 30S RIBOSOMAL PROTEIN S19
    Polymer: 19 Type: protein Length: 93
    Chains: S
    Organism Thermus thermophilus HB8
    Gene Names rpsS TTHA1688
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP2  
    Molecule: 30S RIBOSOMAL PROTEIN S20
    Polymer: 20 Type: protein Length: 106
    Chains: T
    Organism Thermus thermophilus HB8
    Gene Names rpsT rps20 TTHA1397
    UniProtKB:   Protein Feature View | Search PDB | P80380  
    Molecule: 30S RIBOSOMAL PROTEIN THX
    Polymer: 21 Type: protein Length: 27
    Chains: U
    Organism Thermus thermophilus HB8
    Gene Names rpsU TTHA1396
    UniProtKB:   Protein Feature View | Search PDB | Q5SIH3  
    Molecule: E-SITE TRNA PHE OR P-SITE TRNA PHE
    Polymer: 22 Type: rna Length: 76
    Chains: V, W
    Organism Escherichia coli K-12
    Molecule: MRNA
    Polymer: 23 Type: rna Length: 27
    Chains: X
    Organism Escherichia coli
    Molecule: A-SITE TRNA G24A TRP-TRNA TRP
    Polymer: 24 Type: rna Length: 77
    Chains: Y
    Details: MUTATION AT G24A
    Organism Escherichia coli K-12
    Molecule: ELONGATION FACTOR TU
    Polymer: 25 Type: protein Length: 405
    Chains: Z
    Organism Thermus thermophilus HB8
    Gene Names tufA tuf TTHA1694
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN6  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Synthetic construct (Escherichia coli)   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1DV4  PARTIAL STRUCTURE OF 16S RIBONUCLEIC ACID OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS 
    1EG0  FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E .COLI 70S RIBOSOME 
    1EMI  STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMALPROTEIN S8. 
    1FJG  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN,AND PAROMOMYCIN 
    1FKA  STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNITAT 3.3 A RESOLUTION 
    1G1X  STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18 , AND 16SRIBOSOMAL RNA 
    1GIX  CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THISFILE, 1GIX, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA,AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1HA3  ELONGATION FACTOR TU IN COMPLEX WITH AURODOX 
    1HNW  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH TETRACYCLINE 
    1HNX  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH PACTAMYCIN 
    1HNZ  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH HYGROMYCIN B 
    1HR0  CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30SRIBOSOMAL SUBUNIT 
    1I94  CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITHTETRACYCLINE, EDEINE AND IF3 
    1I95  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH EDEINE 
    1I96  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATIONFACTOR IF3 (C- TERMINAL DOMAIN) 
    1I97  CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUSTHERMOPHILUS IN COMPLEX WITH TETRACYCLINE 
    1IBK  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN 
    1IBL  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATETRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE ANDWITH THE ANTIBIOTIC PAROMOMYCIN 
    1IBM  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATETRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE 
    1J5E  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT 
    1JGO  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1JGP  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1JGQ  THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE,1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, ANDMRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY 
    1L1U  TERNARY COMPLEX DOCKED IN THE DECODING SITE OF THE 30SRIBOSOMAL SUBUNIT 
    1N32  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITBOUND TO CODON AND NEAR- COGNATE TRANSFER RNA ANTICODONSTEM-LOOP MISMATCHED AT THE FIRST CODON POSITION AT THE ASITE WITH PAROMOMYCIN 
    1N33  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITBOUND TO CODON AND NEAR- COGNATE TRANSFER RNA ANTICODONSTEM-LOOP MISMATCHED AT THE SECOND CODON POSITION AT THE ASITE WITH PAROMOMYCIN 
    1N34  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN THE PRESENCE OF CODON AND CRYSTALLOGRAPHICALLYDISORDERED NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOPMISMATCHED AT THE FIRST CODON POSITION 
    1N36  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNITIN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODONAND NEAR- COGNATE TRANSFER RNA ANTICODON STEM- LOOPMISMATCHED AT THE SECOND CODON POSITION 
    1PN7  COORDINATES OF S12, L11 PROTEINS AND P- TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E. COLIRIBOSOME 
    1PN8  COORDINATES OF S12, L11 PROTEINS AND E- SITE TRNA FROM 70SCRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAPOF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATESORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THEPOSITION OF THE HYBRID P /E-SITE TRNA. 
    1PNS  CRYSTAL STRUCTURE OF A STREPTOMYCIN DEPENDENT RIBOSOME FROME. COLI, 30S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNS,CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNAMOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU. 
    1PNX  CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI,30S SUBUNIT OF 70S RIBOSOME . THIS FILE, 1PNX, CONTAINSONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50SSUBUNIT IS IN THE PDB FILE 1PNY. 
    1QD7  PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT 
    1QZC  COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTEDINTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX(GDP.KIRROMYCIN) BOUND 70S RIBOSOME 
    1RSS  RIBOSOMAL PROTEIN S7 FROM THERMUS THERMOPHILUS 
    1TWT  MODEL STRUCTURE OF THE T. THERMOPHILUS 70S RIBOSOME, 30SSUBUNIT OF 70S ROBOSOME. THIS FILE, 1TWT, CONTAINS ONLYMOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT ISIN THE PDB FILE 1TWV. 
    1VOV  CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIACOLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30SSUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURECONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. 
    1XMO  CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITHAAG-MRNA IN THE DECODING CENTER 
    1XMQ  CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA- MRNA BOUND TO THEDECODING CENTER 
    1XNQ  STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX INTHE CONTEXT OF THE DECODING CENTER 
    1XNR  CRYSTAL STRUCTURE OF AN INOSINE-CYTOSINE WOBBLE BASE PAIRIN THE CONTEXT OF THE DECODING CENTER 
    1YL4  CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR ANDTRNAS. 30S SUBUNIT. THE COORDINATES FOR THE 50S SUBUNITARE IN THE PDB ENTRY 1YL3 
    2B64  30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS, MRNA ANDRELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLERIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINSONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF1 ANDIS DESCRIBED IN REMARK 400. 
    2B9M  30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX.THIS FILE CONTAINS THE 30S RIBOSOMAL SUBUNIT, TRNAS, MRNAAND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THEWHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURECONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTORRF2 AND IS DESCRIBED IN REMARK 400. 
    2B9O  30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTALSTRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODONIN THE A-SITE. THIS FILE CONTAINS THE 30S SUBUNIT, TRNASAND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMALCOMPLEX WITH A STOP CODON IN THE A-SITE AND IS DESCRIBEDIN REMARK 400. 
    2C78  EF-TU COMPLEXED WITH A GTP ANALOG AND THE ANTIBIOTIC PULVOMYCIN 
    2F4V  30S RIBOSOME + DESIGNER ANTIBIOTIC 
    2J00  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. 
    2J02  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. 
    2JL5  INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT. 
    2JL7  INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT. 
    2UU9  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUA  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUB  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UUC  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE- ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN. 
    2UXB  CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. 
    2UXC  CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. 
    2UXD  CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. 
    2V46  STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 1. 
    2V48  STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 2. 
    2VQE  MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING 
    2VQF  MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING 
    2WDG  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. 
    2WDH  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. 
    2WDK  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. 
    2WDM  STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. 
    2WH1  INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME 
    2WH3  INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME 
    2WRN  THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 1 OF 4). 
    2WRQ  THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 3 OF 4). 
    2X9R  STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE 
    2X9T  STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE 
    2XFZ  STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 1 OF 4) 
    2XG1  STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 3 OF 4) 
    2XQD  THE STRUCTURE OF EF-TU AND AMINOACYL-TRNA BOUND TO THE 70S RIBOSOME WITH A GTP ANALOG 
    2XSY  TRNA TRANLOCATION ON THE 70S RIBOSOME: THE PRE-TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(PRE) 
    2XUY  TRNA TRANLOCATION ON THE 70S RIBOSOME: THE POST-TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(POST) 
    2Y0U  THE CRYSTAL STRUCTURE OF EF-TU AND A9C- TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME 
    2Y0W  THE CRYSTAL STRUCTURE OF EF-TU AND A9C- TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME 
    2Y0Z  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME 
    2Y10  THE CRYSTAL STRUCTURE OF EF-TU AND TRP- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y11  THE CRYSTAL STRUCTURE OF EF-TU AND TRP- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y12  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME 
    2Y13  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME 
    2Y14  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y15  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y16  THE CRYSTAL STRUCTURE OF EF-TU AND G24A- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y17  EF-TU COMPLEX 3 
    2Y18  THE CRYSTAL STRUCTURE OF EF-TU AND TRP- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
    2Y19  THE CRYSTAL STRUCTURE OF EF-TU AND TRP- TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GDP
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    GDP C10 H15 N5 O11 P2
    GUANOSINE-5'-DIPHOSPHATE
    KIR
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    KIR C43 H60 N2 O12
    KIRROMYCIN
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    4SU
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    4SU C9 H13 N2 O8 P S U rnaLinking
    H2U
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    H2U C9 H15 N2 O9 P U rnaLinking
    OMC
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    OMC C10 H16 N3 O8 P C rnaLinking
    MIA
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    MIA C16 H26 N5 O7 P S A rnaLinking
    7MG
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    7MG C11 H18 N5 O8 P G rnaLinking
    5MU
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    5MU C10 H15 N2 O9 P U rnaLinking
    PSU
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    PSU C9 H13 N2 O9 P U rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 2Y0Y
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (2Y0Y and 2Y0Z)