2XSS

Crystal structure of GAFb from the human phosphodiesterase 5

PDB DOI: https://doi.org/10.2210/pdb2XSS/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-09-30 Released: 2011-05-18
Deposition Author(s): Schlicker, C., Russwurm, M., Steegborn, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.317
R-Value Work: 0.248
R-Value Observed: 0.252

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the Gaf-B Domain from Human Phosphodiesterase 5.

Russwurm, M., Schlicker, C., Weyand, M., Koesling, D., Steegborn, C.

(2011) Proteins 79: 1682

PubMed: 21425347 Search on PubMed
DOI: https://doi.org/10.1002/prot.22989
Primary Citation of Related Structures:
2XSS

Organizational Affiliation

Department of Pharmacology and Toxicology, Ruhr-University Bochum, Germany.

Macromolecule Content

Total Structure Weight: 41.35 kDa
Atom Count: 2,377
Modelled Residue Count: 306
Deposited Residue Count: 362
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CGMP-SPECIFIC 3', 5'-CYCLIC PHOSPHODIESTERASE	A, B	181	Homo sapiens	Mutation(s): 0 EC: 3.1.4.35
UniProt & NIH Common Fund Data Resources
Find proteins for O76074 (Homo sapiens) Explore O76074 Go to UniProtKB: O76074
PHAROS: O76074 GTEx: ENSG00000138735
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O76074
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.317
R-Value Work: 0.248
R-Value Observed: 0.252
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.75	α = 90
b = 64.75	β = 90
c = 145.31	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
autoSHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-05-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.