2XRX

CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 2XRX

Classification: OXIDOREDUCTASE

Total Structure Weight: 888889.25

Macromolecule Entities
Molecule Chains Length Organism Details
BIPHENYL DIOXYGENASE SUBUNIT ALPHA A, C, E..., G, I, K, M, O, Q, S, U, WA, C, E, G, I, K, M, O, Q, S, U, W 459 Paraburkholderia xenovorans EC#: 1.14.12.18 IUBMB
Gene Name(s): bphA Bxeno_C1131 Bxe_C1197
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BIPHENYL DIOXYGENASE SUBUNIT BETA B, D, F..., H, J, L, N, P, R, T, V, XB, D, F, H, J, L, N, P, R, T, V, X 188 Paraburkholderia xenovorans EC#: 1.14.12.18 IUBMB
Gene Name(s): bphE Bxeno_C1130 Bxe_C1196
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FES
Query on FES

A, C, E, G, I, K, M, O, Q, S, U, W FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BNL
Query on BNL

A, C, E, G, I, K, M, O, Q, S, U, W BIPHENYL
C12 H10
ZUOUZKKEUPVFJK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, C, E, G, I, K, M, O, Q, S, U, W FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.233
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 132.82 α = 102.65
b = 132.65 β = 101.11
c = 130.42 γ = 105.31

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-23
  • Released Date: 2010-11-24
  • Deposition author(s): Kumar, P., Bolin, J.T.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance