2XJJ

Structure of HSP90 with small molecule inhibitor bound

Structural Biology Knowledgebase: 2XJJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 2XJJ

Classification: CHAPERONE

Total Structure Weight: 56660.05

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN HSP 90-ALPHA A, B 249 Homo sapiens Fragment: RESIDUES 9-236
Mutation: E158V
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L81
Query on L81

A, B 1,3-DIHYDROISOINDOL-2-YL-(6-HYDROXY-3,3-DIMETHYL- 1,2-DIHYDROINDOL-5-YL)METHANONE
C19 H20 N2 O2
ATFBTSVSJAEVMV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
L81 N/A in BindingDB
Kd: 310 nM  BindingMOAD
Kd: 310 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.183
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.33 α = 82.59
b = 56.10 β = 84.71
c = 61.61 γ = 69.24

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-06
  • Released Date: 2010-08-11
  • Deposition author(s): Murray, C.W., Carr, M.G., Callaghan, O., Chessari, G., Congreve, M., Cowan, S., Coyle, J.E., Downham, R., Figueroa, E., Frederickson, M., Graham, B., McMenamin, R., OBrien, M.A., Patel, S., Phillips, T.R., Williams, G., Woodhead, A.J., Woolford, A.J.A.

Revision History

  • 2015-04-01
    Type: Citation | Details: JRNL
  • 2013-04-24
    Type: Non-polymer description | Details: HETSYN
  • 2013-04-24
    Type: Version format compliance | Details: REMARK 4
  • 2013-04-24
    Type: Entry title | Details: TITLE
  • 2013-04-24
    Type: Other | Details: REMARK 900