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STRUCTURE OF 4-AMINO-N-(4-CHLOROBENZYL)-1-(7H-PYRROLO(2,3-D) PYRIMIDIN-4-YL)PIPERIDINE-4-CARBOXAMIDE BOUND TO PKB
2X39
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 41368.90
    Molecule: RAC-BETA SERINE/THREONINE-PROTEIN KINASE
    Polymer: 1 Type: protein Length: 342
    Chains: A
    EC#: 2.7.11.1   
    Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 146-467
    Details: PIFTIDE SEQUENCE (EEQEMFEDFDYIADW) REPLACES NATURAL PKB SEQUENCE AFTER RESIDUE 464C
    Organism: Homo sapiens
    Gene Name: Gene View for AKT2
    UniProtKB: Protein Feature View | Search PDB | P31751  
    Molecule: GLYCOGEN SYNTHASE KINASE-3 BETA
    Polymer: 2 Type: protein Length: 10
    Chains: C
    EC#: 2.7.11.1    2.7.11.26   
    Fragment: RESIDUES 3-12
    Details: PEPTIDE DERIVED FROM THE KINASE GSK3-BETA
    Organism: Homo sapiens
    Gene Name: Gene View for GSK3B
    UniProtKB: Protein Feature View | Search PDB | P49841  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1GNG  GLYCOGEN SYNTHASE 3BETA (GSK3) COMPLEX WITH FRATTIDE PEPTIDE 
    1H8F  GLYCOGEN SYNTHASE KINASE 3 BETA. 
    1I09  STRUCTURE OF GLYCOGEN SYNTHASE KINASE-3 ( GSK3B) 
    1J1B  BINARY COMPLEX STRUCTURE OF HUMAN TAU PROTEIN KINASE I WITHAMPPNP 
    1J1C  BINARY COMPLEX STRUCTURE OF HUMAN TAU PROTEIN KINASE I WITHADP 
    1O6K  STRUCTURE OF ACTIVATED FORM OF PKB KINASE DOMAIN S474D WITH GSK3 PEPTIDE AND AMP-PNP 
    1O6L  CRYSTAL STRUCTURE OF AN ACTIVATED AKT/ PROTEIN KINASE B (PKB-PIF CHIMERA) TERNARY COMPLEX WITH AMP-PNP AND GSK3 PEPTIDE 
    1O9U  GLYCOGEN SYNTHASE KINASE 3 BETA COMPLEXED WITH AXIN PEPTIDE 
    1PYX  GSK-3 BETA COMPLEXED WITH AMP-PNP 
    1Q3D  GSK-3 BETA COMPLEXED WITH STAUROSPORINE 
    1Q3W  GSK-3 BETA COMPLEXED WITH ALSTERPAULLONE 
    1Q41  GSK-3 BETA COMPLEXED WITH INDIRUBIN-3'- MONOXIME 
    1Q4L  GSK-3 BETA COMPLEXED WITH INHIBITOR I-5 
    1Q5K  CRYSTAL STRUCTURE OF GLYCOGEN SYNTHASE KINASE 3 INCOMPLEXED WITH INHIBITOR 
    1R0E  GLYCOGEN SYNTHASE KINASE-3 BETA IN COMPLEX WITH 3-INDOLYL-4-ARYLMALEIMIDE INHIBITOR 
    1UV5  GLYCOGEN SYNTHASE KINASE 3 BETA COMPLEXED WITH 6-BROMOINDIRUBIN-3'-OXIME 
    2JDO  STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4- CHLOROBENZYLOXY) ETHYLAMINO)ETHYL)AMIDE 
    2JDR  STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH THE INHIBITOR A-443654 
    2JLD  EXTREMELY TIGHT BINDING OF RUTHENIUM COMPLEX TO GLYCOGEN SYNTHASE KINASE 3 
    2UW9  STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH 4-(4-CHLORO-PHENYL)-4-(4-(1H-PYRAZOL-4 -YL)-PHENYL)-PIPERIDINE 
    2X37  STRUCTURE OF 4-(4-TERT-BUTYLBENZYL)-1-(7H -PYRROLO(2,3-D)PYRIMIDIN-4-YL)PIPERIDIN- 4-AMINE BOUND TO PKB 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    X39
    Search 
    Download 
    X39 C19 H21 Cl N6 O
    4-AMINO-N-(4-CHLOROBENZYL)-1-(7H-PYRROLO[2,3- D]PYRIMIDIN-4-YL)PIPERIDINE-4-CARBOXAMIDE
    X39:2X39
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    X39
    Search 
    Download 
    X39
    IC50: 2.2 - 66 nM (97) - data from BindingDB  
    IC50: 30 nM - data from BindingMOAD  
    IC50: 2.2 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    TPO
    Search 
    TPO C4 H10 N O6 P THR lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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