2WY8

Staphylococcus aureus complement subversion protein Sbi-IV in complex with complement fragment C3d

Structural Biology Knowledgebase: 2WY8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WY8

Classification: IMMUNE SYSTEM

Total Structure Weight: 44187.95

Macromolecule Entities
Molecule Chains Length Organism Details
COMPLEMENT C3D FRAGMENT A 310 Homo sapiens Fragment: C3D, RESIDUES 996-1303
Mutation: C24A
Gene Name(s): C3 Gene View CPAMD1
IGG-BINDING PROTEIN Q 80 Staphylococcus aureus Fragment: SBI-IV, RESIDUES 198-266
Gene Name(s): SAHG_00235

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.169
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.43 α = 90.00
b = 81.01 β = 90.00
c = 87.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-13
  • Released Date: 2010-12-01
  • Deposition author(s): Clark, E.A., Crennell, S., Upadhyay, A., Mackay, J.D., Bagby, S., van den Elsen, J.M.

Revision History

  • 2013-09-18
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-09-18
    Type: Version format compliance | Details: REMARK 4
  • 2013-09-18
    Type: Non-polymer description | Details: HETSYN