2VYA

CRYSTAL STRUCTURE OF FATTY ACID AMIDE HYDROLASE CONJUGATED WITH THE DRUG-LIKE INHIBITOR PF-750

Structural Biology Knowledgebase: 2VYA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VYA

Classification: HYDROLASE

Total Structure Weight: 130017.88

Macromolecule Entities
Molecule Chains Length Organism Details
FATTY-ACID AMIDE HYDROLASE 1 A, B 587 Rattus norvegicus EC#: 3.5.1.99 IUBMB
Fragment: RESIDUES 32-579
Mutation: L192F, F194Y, A377T, S435N, I491V, V495M
Details: S241 IS CARBAMYLATED TO 4-(QUINOLIN-3-YLMETHYL)PIPERIDINE-1-CARBALDEHYDE CHEMICAL FORMULA, C16H18N2O
Gene Name(s): Faah Faah1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Hydrolases

Protein Name: Fatty acid amide hydrolase


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PF7
Query on PF7

A, B 4-(quinolin-3-ylmethyl)piperidine-1-carboxylic acid
C16 H18 N2 O2
QUAGUFNCKDDJFZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.188
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.69 α = 90.00
b = 103.69 β = 90.00
c = 253.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-22
  • Released Date: 2008-09-09
  • Deposition author(s): Mileni, M., Johnson, D.S., Wang, Z., Everdeen, D.S., Liimatta, M., Pabst, B., Bhattacharya, K., Nugent, R.A., Kamtekar, S., Cravatt, B.F., Ahn, K., Stevens, R.C.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4