2VSO

CRYSTAL STRUCTURE OF A TRANSLATION INITIATION COMPLEX

Structural Biology Knowledgebase: 2VSO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VSO

Classification: HYDROLASE / TRANSLATION

Total Structure Weight: 154908.25

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-DEPENDENT RNA HELICASE EIF4A A, B 395 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Gene Name(s): TIF1 TIF41A YKR059W TIF2 TIF41B YJL138C J0660
EUKARYOTIC INITIATION FACTOR 4F SUBUNIT P150 E, F 284 Saccharomyces cerevisiae Fragment: MIDDLE DOMAIN, 4A-BINDING, 572-854
Gene Name(s): TIF4631 YGR162W

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A, B ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.214
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.26 α = 91.70
b = 69.80 β = 102.01
c = 101.97 γ = 115.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-28
  • Released Date: 2008-06-24
  • Deposition author(s): Schutz, P., Bumann, M., Oberholzer, A.E., Bieniossek, C., Altmann, M., Trachsel, H., Baumann, U.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4