2VPJ

Crystal structure of the Kelch domain of human KLHL12

Structural Biology Knowledgebase: 2VPJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VPJ

Classification: PROTEIN-BINDING

Total Structure Weight: 33024.19

Macromolecule Entities
Molecule Chains Length Organism Details
KELCH-LIKE PROTEIN 12 A 301 Homo sapiens Fragment: KELCH DOMAIN, RESIDUES 268-567
Gene Name(s): KLHL12 Gene View C3IP1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.161
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.64 α = 90.00
b = 61.55 β = 111.75
c = 45.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-29
  • Released Date: 2008-03-18
  • Deposition author(s): Keates, T., Pike, A.C.W., Bullock, A.N., Salah, E., Filippakopoulos, P., Roos, A.K., von Delft, F., Savitsky, P., Weigelt, J., Edwards, A., Arrowsmith, C.H., Bountra, C., Knapp, S.

Revision History

  • 2013-03-27
    Type: Citation | Details: JRNL
  • 2013-02-06
    Type: Binding sites and description | Details: SITE
  • 2013-02-06
    Type: Citation | Details: JRNL
  • 2013-02-06
    Type: Entry authorship | Details: AUTHOR
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4