2VIG

Crystal structure of human short-chain acyl CoA dehydrogenase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 2VIG

Classification: OXIDOREDUCTASE

Total Structure Weight: 348334.81

Macromolecule Entities
Molecule Chains Length Organism Details
SHORT-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 391 Homo sapiens EC#: 1.3.8.1 IUBMB
Fragment: RESIDUES 30-412
Mutation: G209S
Gene Name(s): ACADS Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COS
Query on COS

B, C, D, F, G COENZYME A PERSULFIDE
C21 H36 N7 O16 P3 S2
REVPHPVBPSIEKM-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FAD
Query on FAD

A, B, C, D, E, F, G, H FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, D, E, F, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.71 α = 90.00
b = 157.62 β = 90.00
c = 260.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-30
  • Released Date: 2007-12-25
  • Deposition author(s): Pike, A.C.W., Pantic, N., Parizotto, E., Gileadi, O., Ugochukwu, E., von Delft, F., Weigelt, J., Arrowsmith, C.H., Edwards, A., Oppermann, U.

Revision History

  • Version 1_0: 2007-12-25

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance