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STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
DOI:10.2210/pdb2vhp/pdb   NDB ID: 2VHP
2VHP
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2VHM   2VHN   2VHO   2VHP  
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The complete entry has been assigned PDB ID 4V5B and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v5b.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v5b.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 789079.58
    Molecule: 16S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 1542
    Chains: A
    Organism: Escherichia coli
    Molecule: 30S RIBOSOMAL PROTEIN S2
    Polymer: 2 Type: protein Length: 240
    Chains: B
    Fragment: RESIDUES 2-241
    Organism: Escherichia coli
    Gene Names: rpsB BC97_01740 BC99_15600 BU34_07500 CF57_23910 CF58_05050 CF59_05100 CF60_05090 CF61_24580 ECs0171 LF82_1969 PGD_03810
    UniProtKB: Protein Feature View | Search PDB | C3TPN2  
    Molecule: 30S RIBOSOMAL PROTEIN S3
    Polymer: 3 Type: protein Length: 232
    Chains: C
    Fragment: RESIDUES 2-233
    Organism: Escherichia coli
    Gene Names: rpsC BC97_15025 BC99_12930 BN17_32481 BU34_11600 CF57_02805 CF58_26975 CF59_26960 CF60_26590 CF61_03565 ECs4179 LF82_1970 PGD_00572
    UniProtKB: Protein Feature View | Search PDB | C3SQX2  
    Molecule: 30S RIBOSOMAL PROTEIN S4
    Polymer: 4 Type: protein Length: 205
    Chains: D
    Fragment: RESIDUES 2-206
    Organism: Escherichia coli
    Gene Names: rpsD BC97_15115 BC99_13020 BN17_32301 BU34_11695 CF57_02900 CF58_26875 CF59_26860 CF60_26490 CF61_03660 ECs4161 LF82_1971 PGD_00590
    UniProtKB: Protein Feature View | Search PDB | C3SR62  
    Molecule: 30S RIBOSOMAL PROTEIN S5
    Polymer: 5 Type: protein Length: 166
    Chains: E
    Fragment: RESIDUES 2-167
    Organism: Escherichia coli
    Gene Names: rpsE BC97_15080 BC99_12985 BN17_32371 BU34_11655 CF57_02860 CF58_26920 CF59_26905 CF60_26535 CF61_03620 ECs4168 LF82_1972 PGD_00583
    UniProtKB: Protein Feature View | Search PDB | C3SR27  
    Molecule: 30S RIBOSOMAL PROTEIN S6
    Polymer: 6 Type: protein Length: 135
    Chains: F
    Organism: Escherichia coli
    Gene Names: rpsF b4200 JW4158
    UniProtKB: Protein Feature View | Search PDB | P02358  
    Molecule: 30S RIBOSOMAL PROTEIN S7
    Polymer: 7 Type: protein Length: 178
    Chains: G
    Fragment: RESIDUES 2-156
    Organism: Escherichia coli
    Gene Names: rpsG b3341 JW3303
    UniProtKB: Protein Feature View | Search PDB | P02359  
    Molecule: 30S RIBOSOMAL PROTEIN S8
    Polymer: 8 Type: protein Length: 129
    Chains: H
    Fragment: RESIDUES 2-130
    Organism: Escherichia coli
    Gene Names: rpsH BC97_15065 BC99_12970 BN17_32401 BU34_11640 CF57_02845 CF58_26935 CF59_26920 CF60_26550 CF61_03605 ECs4171 LF82_1975 PGD_00580
    UniProtKB: Protein Feature View | Search PDB | C3SR12  
    Molecule: 30S RIBOSOMAL PROTEIN S9
    Polymer: 9 Type: protein Length: 129
    Chains: I
    Fragment: RESIDUES 2-130
    Organism: Escherichia coli
    Gene Names: rpsI BC97_21480 BC99_05195 BN17_31671 BU34_12100 CF57_03315 CF58_26465 CF59_26450 CF60_25995 CF61_04090 ECs4103 LF82_1976 PGD_03886
    UniProtKB: Protein Feature View | Search PDB | C3SRY2  
    Molecule: 30S RIBOSOMAL PROTEIN S10
    Polymer: 10 Type: protein Length: 103
    Chains: J
    Organism: Escherichia coli
    Gene Names: rpsJ BC97_14990 BC99_12895 BN17_32551 BU34_11565 CF57_02770 CF58_27010 CF59_26995 CF60_26625 CF61_03530 ECs4186 LF82_1977 PGD_00565
    UniProtKB: Protein Feature View | Search PDB | C3SQT7  
    Molecule: 30S RIBOSOMAL PROTEIN S11
    Polymer: 11 Type: protein Length: 128
    Chains: K
    Fragment: RESIDUES 2-129
    Organism: Escherichia coli
    Gene Names: rpsK BC97_15110 BC99_13015 BN17_32311 BU34_11690 CF57_02895 CF58_26880 CF59_26865 CF60_26495 CF61_03655 ECs4162 LF82_1978 PGD_00589
    UniProtKB: Protein Feature View | Search PDB | C3SR57  
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 12 Type: protein Length: 123
    Chains: L
    Fragment: RESIDUES 2-124
    Organism: Escherichia coli
    Gene Names: rpsL BC97_08880 BC99_08880 BN17_32761 BU34_11430 CF57_02635 CF58_27050 CF59_27035 CF60_26670 CF61_03395 ECs4193 LF82_1979 PGD_00544
    UniProtKB: Protein Feature View | Search PDB | C3SQR7  
    Molecule: 30S RIBOSOMAL PROTEIN S13
    Polymer: 13 Type: protein Length: 117
    Chains: M
    Fragment: RESIDUES 2-118
    Organism: Escherichia coli
    Gene Names: rpsM BC97_15105 BC99_13010 BN17_32321 BU34_11685 CF57_02890 CF58_26885 CF59_26870 CF60_26500 CF61_03650 ECs4163 LF82_1980 PGD_00588
    UniProtKB: Protein Feature View | Search PDB | C3SR52  
    Molecule: 30S RIBOSOMAL PROTEIN S14
    Polymer: 14 Type: protein Length: 100
    Chains: N
    Fragment: RESIDUES 2-101
    Organism: Escherichia coli
    Gene Names: rpsN BC97_15060 BC99_12965 BN17_32411 BU34_11635 CF57_02840 CF58_26940 CF59_26925 CF60_26555 CF61_03600 ECs4172 LF82_1981
    UniProtKB: Protein Feature View | Search PDB | C3SR07  
    Molecule: 30S RIBOSOMAL PROTEIN S15
    Polymer: 15 Type: protein Length: 89
    Chains: O
    Organism: Escherichia coli
    Gene Names: rpsO ECSP_4140
    UniProtKB: Protein Feature View | Search PDB | C6UUI7  
    Molecule: 30S RIBOSOMAL PROTEIN S16
    Polymer: 16 Type: protein Length: 82
    Chains: P
    Organism: Escherichia coli
    Gene Names: rpsP BC97_04690 BC99_07615 BN17_24641 BU34_29665 CF57_07285 CF58_22220 CF59_22185 CF60_21845 CF61_07985 ECs3472 LF82_1983 PGD_04459
    UniProtKB: Protein Feature View | Search PDB | C3SYP2  
    Molecule: 30S RIBOSOMAL PROTEIN S17
    Polymer: 17 Type: protein Length: 83
    Chains: Q
    Organism: Escherichia coli
    Gene Names: rpsQ BC97_15040 BC99_12945 BN17_32451 BU34_11615 CF57_02820 CF58_26960 CF59_26945 CF60_26575 CF61_03580 ECs4176 LF82_1984 PGD_00575
    UniProtKB: Protein Feature View | Search PDB | C3SQY7  
    Molecule: 30S RIBOSOMAL PROTEIN S18
    Polymer: 18 Type: protein Length: 74
    Chains: R
    Fragment: RESIDUES 2-84 FRAGMENT: RESIDUES 2-75
    Organism: Escherichia coli
    Gene Names: rpsR BC97_07860 BC99_16650 BN17_41791 BU34_16370 CF57_27390 CF58_02585 CF59_02635 CF60_02620 CF61_28090 ECs5178 LF82_1985 PGD_03384
    UniProtKB: Protein Feature View | Search PDB | C3SFP7  
    Molecule: 30S RIBOSOMAL PROTEIN S19
    Polymer: 19 Type: protein Length: 91
    Chains: S
    Fragment: RESIDUES 2-92
    Organism: Escherichia coli
    Gene Names: rpsS BC97_15015 BC99_12920 BN17_32501 BU34_11590 CF57_02795 CF58_26985 CF59_26970 CF60_26600 CF61_03555 ECs4181 LF82_1986 PGD_00570
    UniProtKB: Protein Feature View | Search PDB | C3SQW2  
    Molecule: 30S RIBOSOMAL PROTEIN S20
    Polymer: 20 Type: protein Length: 86
    Chains: T
    Fragment: RESIDUES 2-87
    Organism: Escherichia coli
    Gene Names: rpsT BC97_11675 BC99_07505 BN17_44451 BU34_08400 CF57_24810 CF58_04135 CF59_04185 CF60_04175 CF61_25480 ECs0026 LF82_1987 PGD_03668
    UniProtKB: Protein Feature View | Search PDB | C3TRH7  
    Molecule: 30S RIBOSOMAL PROTEIN S21
    Polymer: 21 Type: protein Length: 71
    Chains: U
    Organism: Escherichia coli
    Gene Names: rpsU BC97_20660 BC99_04375 BN17_30001 BU34_13215 CF57_04430 CF58_25430 CF59_25415 CF60_24965 CF61_05205 ECs3948 LF82_1988 PGD_04046
    UniProtKB: Protein Feature View | Search PDB | C3STZ7  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2VHM  STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME 
    2VHN  STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME 
    2VHO  STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
    Search 
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 2VHP
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (2VHM and 2VHO)