2VG5

Crystal structures of HIV-1 reverse transcriptase complexes with thiocarbamate non-nucleoside inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 2VG5

Classification: TRANSFERASE

Total Structure Weight: 114577.90

Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE/RIBONUCLEASE H A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.4 IUBMB
Fragment: GAG-POL POLYPROTEIN P66 SUBUNIT, RESIDUES 600-1156
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
P51 RT B 428 Human immunodeficiency virus 1 Fragment: GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NNC
Query on NNC

A O-[2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2- yl)ethyl] (4-chlorophenyl)thiocarbamate
C17 H13 Cl N2 O3 S
BWRRXOIACQYNEK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.237
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 118.86 α = 90.00
b = 156.13 β = 90.00
c = 154.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-08
  • Released Date: 2007-12-11
  • Deposition author(s): Spallarossa, A., Cesarini, S., Ranise, A., Ponassi, M., Unge, T., Bolognesi, M.

Revision History

  • Version 1_0: 2007-12-11

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance