2VD5

STRUCTURE OF HUMAN MYOTONIC DYSTROPHY PROTEIN KINASE IN COMPLEX WITH THE BISINDOYLMALEIDE INHIBITOR BIM VIII

Structural Biology Knowledgebase: 2VD5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VD5

Classification: TRANSFERASE

Total Structure Weight: 93008.72

Macromolecule Entities
Molecule Chains Length Organism Details
DMPK PROTEIN A, B 412 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 11-420
Gene Name(s): DMPK Gene View DM1PK MDPK

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BI8
Query on BI8

A, B 3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1- METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
C24 H22 N4 O2
UQHKJRCFSLMWIA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.196
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 122.60 α = 90.00
b = 122.60 β = 90.00
c = 134.28 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-30
  • Released Date: 2007-11-06
  • Deposition author(s): Pike, A.C.W., Amos, A., Elkins, J., Bullock, A., Guo, K., Fedorov, O., Bunkoczi, G., Filippakopoulos, P., Pilka, E.S., Ugochukwu, E., Umeano, C., Niesen, F., Sundstrom, M., Weigelt, J., Edwards, A., Arrowsmith, C.H., Von Delft, F., Knapp, S.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4