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X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 24
2VA6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 50899.21
    Molecule: BETA SECRETASE 1
    Polymer: 1 Type: protein Length: 455
    Chains: A
    EC#: 3.4.23.46   
    Fragment: PROTEASE DOMAIN, RESIDUES 14-453
    Mutation: YES
    Organism Homo sapiens
    Gene Names BACE1 BACE KIAA1149
    UniProtKB:   Protein Feature View | Search PDB | P56817  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1FKN  STRUCTURE OF BETA-SECRETASE COMPLEXED WITH INHIBITOR 
    1M4H  CRYSTAL STRUCTURE OF BETA-SECRETASE COMPLEXED WITHINHIBITOR OM00-3 
    1PY1  COMPLEX OF GGA1-VHS DOMAIN AND BETA- SECRETASE C-TERMINALPHOSPHOPEPTIDE 
    1SGZ  CRYSTAL STRUCTURE OF UNBOUND BETA-SECRETASE CATALYTICDOMAIN. 
    1TQF  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-124,671 
    1UJJ  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINAL PEPTIDEFROM BACE 
    1UJK  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINALPHOSPHOPEPTIDE FROM BACE 
    1W50  APO STRUCTURE OF BACE (BETA SECRETASE) 
    1W51  BACE (BETA SECRETASE) IN COMPLEX WITH A NANOMOLAR NON-PEPTIDIC INHIBITOR 
    1XN2  NEW SUBSTRATE BINDING POCKETS FOR BETA- SECRETASE. 
    1XN3  CRYSTAL STRUCTURE OF BETA-SECRETASE BOUND TO A LONGINHIBITOR WITH ADDITIONAL UPSTREAM RESIDUES. 
    1XS7  CRYSTAL STRUCTURE OF A CYCLOAMIDE-URETHANE- DERIVED NOVELINHIBITOR BOUND TO HUMAN BRAIN MEMAPSIN 2 (BETA-SECRETASE). 
    1YM2  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AUR200 
    1YM4  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AMK640 
    2B8L  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-000384950 
    2B8V  CRYSTAL STRUCTURE OF HUMAN BETA-SECRETASE COMPLEXED WITH L-L000430,469 
    2VA5  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 8C 
    2VA7  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 27 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    H24
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    H24 C19 H21 N3 O2
    (6S)-2-amino-6-(3'-methoxybiphenyl-3-yl)- 3,6-dimethyl-5,6-dihydropyrimidin-4(3H)-one
    H24:2VA6
    IOD
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    IOD I
    IODIDE ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    H24
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    H24
    IC50: 840 nM (99) - data from BindingDB  
    Ki: 270 nM (99) - data from BindingDB  
    IC50: 590 nM - data from BindingMOAD  
    IC50: 670 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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